CCseqBasic

~ Quality control and runtime log files

Go Back

How to access the html page of Quality Control and runtime log files ?

The top of the page is the NG-captureC library QC and interaction counters

The top of the page contains the total counts for interactions, for each capture site.

It also contains a summary bar graph, to describe the quality of the NG-Capture-C library.

The rest of the page contains the runtime logs of all the tools

The rest of the page contains various runtime logs and Quality Control measures performed during the analysis steps

Various Quality control reports and tool output logs

• Read trimming
• Read pair combining (flashing)
• In-silico Restriction Enzyme digestion

• Read trimming (what was trimmed and how did it go)
• Read pair combining (flashing) - how many reads were combined, and how did it go
• In-silico Restriction Enzyme digestion - which kind of RE site containing reads were found

All run steps in chronological order

The rest of the page contains all run steps, carefully documented.
The order of the reports follows the output folder structure.

To better understand the value and use of these reports, it is recommended to dig deeper into pages :

Interaction counts (and how to interpret these)

Output folders (what do you get and how to browse)

Analysis steps (what does the run do ?)