CHANGELOG

Section: CCB Changelog (7)
Last updated: Wed 10 Jan 16:53:42 GMT 2024
Index Return to Main Contents
 

DEPRECATION NOTICE

This CCB documentation has been superseded by our new website: https://lumin.imm.ox.ac.uk  

OVERVIEW

This page provides a reverse chronological list of changes made to CCB systems. For new software installs see: module-installs(7) python-installs(7) R-installs(7).  

CHANGELOG

2023-11-07: Update R-cbrg(7) to describe interfacing RStudio with Python, see section RStudio talking to Python.

2023-11-01: Update Jupyter PDF tutorial to describe changing folder to e.g. /project/... . Click new section Changing working directory in PDF linked at welcome(7).

2023-10-31: New page listing known issues with Jade: known-issues(7).

2023-10-25: Adjust Jade queues: retire rarely-used jumbo queue, reallocate its resources to long queue, and doubled memory limits of long and short queues.

2023-10-16: New section on setting-up Conda in python-cbrg(7) page.

2023-09-18: New pages listing all installed Bioinformatics software: module-installs(7) python-installs(7) R-installs(7).

2023-08-01: Added flexbar.

2023-07-28: Updated differences(7) with additional information on Bash.

2023-07-27: Removed broken older versions of meme.

2023-07-26: Added vireoSNP to python-cbrg(7). Added rename to the path.

2023-07-10: Restricted logins to cbrglogin1 and cbrglogin3 to 4 CPU cores and 32GB RAM each.

2023-07-05: Installed feh(1) and xpdf(1) to default path on the login nodes.

2023-06-29: Added Seurat 5 to R-cbrg(7) current. This introduced breaking changes, so reverted to 4.3.0.  

GETTING HELP

You can email the CCB team using the email address help@imm.ox.ac.uk. Using this address ensures your email is logged and assigned a tracking number, and will go to all the core team, which means the appropriate person or people will be able to pick it up.  

COPYRIGHT

This text is copyright University of Oxford and MRC and may not be reproduced or redistributed without permission.  

AUTHORS

Duncan Tooke <duncan.tooke@imm.ox.ac.uk>

Andrew Owenson <andrew.owenson@imm.ox.ac.uk>  

SEE ALSO

known-issues(7)


 

Index

DEPRECATION NOTICE
OVERVIEW
CHANGELOG
GETTING HELP
COPYRIGHT
AUTHORS
SEE ALSO