2023-12-13: downgrades: python-base/3.10.13
2023-12-06: new: R-base-lapack/4.3.0
2023-12-04: new: py-mira/2.1.0
2023-11-24: new: TEpeaks/0.1
2023-11-22: new: cnvkit/0.9.10 ; tensorflow2-cpu/2.14.0
2023-11-21: new: R-base/4.3.0
2023-11-17: updates: cellranger/7.2.0
2023-11-16: new: cuDNN/8.9.6 ; tensorflow2-gpu/2.15.0
2023-11-16: updates: cuda/12.2v2
2023-11-03: updates: rna-star/2.7.11a ; STAR/2.7.11a
2023-10-20: updates: cuda/12.2
2023-10-11: new: py-cellbender/0.3.0
2023-09-28: updates: spaceranger/2.1.0
2023-09-20: new: fastq-tools/0.8.3
2023-09-19: new: geos/3.10.1 ; openjdk/10.0.2
2023-09-14: updates: annovar/20191024
alicevision/2.2.0 cellranger-atac/1.2.0 htslib/1.10 pandaseq/2.11 sratoolkit/2.10.8
annovar/20180416 /2.1.0 /1.10.2 pear/20210121 /2.9.6
/20191024 cellsnp-lite/20210816 /1.18 perl/5.36.1 /3.0.0
/20230914 cellxgene/20230703 /1.3 phylip/3.697 STAR/2.6.0c
aspera/3.9.8 chips/2.1 /1.5 picard-tools/2.18.17 /2.6.1d
/3.9.9 circos/0.69-9 /1.8 /2.3.0 /2.7.11a
atacqc/20170728 clustalw/2.1 /1.9 plink/1.07 /2.7.3a
avocato-deps/20221121 cnvkit/0.9.10 igblast/1.16.0 /1.90b6.24 /2.7.8a
/20230726 cuda/10.0 /1.19.0 /1.90b7 star-fusion/1.11.0
aws-cli/20220822 /10.1 igor/1.4.0 /2.00a4.6 stringtie/2.1.4
bam-readcount/20201113 /12.2 igv/2.14.1 pod5/0.2.4 subread/2.0.0
bamscale/0.0.5 /12.2v2 /2.4.11 proj/7.2.1 /2.0.3
/1.0 /8.0 ilastik/1.3.3post3 /8.1.1 /2.0.6
bamtools/2.5.1 /9.0 imacyte/20200929 py-capcruncher/0.3.8 subset-bam/1.1.0
bamutil/1.0.14 cuDNN/8.9.6 impute2/2.3.2 py-cellbender/0.3.0 tdrmapper/20210407
barcounter/20211216 cufflinks/2.2.1 index-hopping-filter/1.1 py-mira/2.1.0 tensorflow2-cpu/2.14.0
basespace-cli/1.4.0 cytoscape/3.6.1 jags/4.3.0 pycharm/2020.1.3 /202311
bbtools/38.90 demuxlet/20210816 java/11.0.2 python-base/3.10.13 tensorflow2-gpu/2.15.0
bcftools/1.17 dorado/0.3.3 /17.0.1 /3.11.3 TEpeaks/0.1
bcl2fastq/2.20.0.422 dropEst/20201211 /7u80 pytorch-gpu/2.0.1 tophat/2.1.1
bedops/2.4.40 eagle/2.4.1 /8u131 qctool/2.0.7 trf/4.09.1
bedtools/2.25.0 edlib/1.2.6 /8u171 qtltools/1.2 trim_galore/0.6.10
/2.26.0 emboss/6.6.0 /8u191 /1.3.1 trimmomatic/0.39
/2.27.1 ensembl-vep/102.0 /8u311 qupath/0.2.3 trinityrnaseq/2.11.0
/2.29.2 fastp/0.23.4 jellyfish/2.3.0 R-base/4.3.0 /2.14.0
bedtools2/2.25.0 fastq-pair/1.0 jq/1.6 R-base-lapack/4.3.0 ucsctools/369
/2.26.0 fastq-tools/0.8.3 juicebox/1.9.8 R-natverse/20230822 /385
/2.27.1 fastq_screen/0.14.1 /2.10.01 repeatmasker/4.1.2 unet/20190409
/2.29.2 fastqc/0.11.5 julia/1.4.1 rmblast/2.10.0 urlwrap/1.0.0
blast/2.11.0 /0.11.9 kallisto/0.46.1 rna-star/2.6.0c vardictjava/1.8.2
bowtie/1.2.1.1 fftw/3.3.10 lanceotron/20230726 /2.6.1d varscan/2.4.2
/1.2.3 fgbio/20210122 libBigWig/0.4.4 /2.7.11a vartrix/1.1.20
bowtie2/2.3.2 fiji/20190409 linasm/1.13 /2.7.3a /1.1.22
/2.3.4.3 flash/1.2.11 longranger/2.2.2 /2.7.8a vcflib/20201113
/2.4.1 flexbar/3.5.0 mallet/202108 rsem/1.2.31 vcftools/0.1.16
/2.4.2 freebayes/1.3.4 manta/1.6.0 /1.3.3 vdjtools/1.2.1
bwa/0.7.17 freesasa/2.0.3 mathematica/11.3.0 salmon/1.3.0 velvet/1.2.10
bwa-mem2/2.2.1 gatk/4.4.0.0 matlab/r2018b /1.8.0 verifybamid/1.0.6
caveman/1.14.0 gctree/20210514 /r2019b sambamba/0.8.0 wxpython/4.0.7post2
ccs/4.2.0 genrich/0.6.1 /r2020a samblaster/0.1.24 zumis/20220222
cdhit/4.8.1 geos/3.10.1 matlab-ubuntu/r2020a samtools/1.17
cellpose/20200526 /3.9.0 meme/5.5.3 sbt/1.4.5
/20210122 go/1.18 meshroom/2019.2.0 schlacount/0.1.0
cellranger/2.1.1 gsea/3.0 methpipe/4.1.1 seqkit/0.12.1
/3.0.1 gsl/2.6 minimap2/2.17 seqmonk/1.47.1
/3.1.0 gtool/0.7.5 miranda/3.3a seqtk/20201102
/4.0.0 guppy/3.3.3 mixcr/3.0.13 sevenbridges/0.18.2
/5.0.0 /4.2.2 mosdepth/0.3.1 snpeff/5.0
/6.0.1 guppy-gpu/3.3.3 mpileup2readcounts/1.0 SNPsplit/0.3.2
/6.1.1 /4.2.2 /1.0a snptest/2.5.2
/6.1.2 hdf5/1.10.7 netMHCpan/4.1b snver/0.5.3
/7.0.0 /1.12.1 nextflow/23.04.1 sortmerna/2.1b
/7.0.1 hdfview/3.1.1 octopus/20200902 spaceranger/1.2.2
/7.1.0 hisat2/20201102 omero/5.2.4 /1.3.1
/7.2.0 hmmer/3.3.2 onetbb/2021.3.0 /2.1.0
cellranger-arc/1.0.1 homer/20201202 openjdk/10.0.2 sqlite/3.35.0
/2.0.0 /11.0.2 /3.36.0
/2.0.2 /12.0.2 /3.37.2
/13.0.2
/14.0.2
/15.0.2
/16.0.2
/17.0.2
/18.0.2
/19.0.1
/20.0.2
/9.0.4