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FAQ : Duplicate - filtering, what is this ?

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    The analysis duplicate-filters the reads.

    The read is considered a duplicate of a previously-encountered read,
    if the read contains the same mapped fragments, in same order, than a previously analysed read (is a true read duplicate).

    Filtering duplicates - printing only reads which are not PCR duplicates.

    About nomenclature of "read" and "fragment" :
    http://userweb.molbiol.ox.ac.uk/public/telenius/captureManual/CCanalyser2_interpretAndTroubleshoot.pdf
            


Page updated by Jelena 27Sep2017