CCseqBasic - for CaptureC data analysis

Page updated by Jelena Telenius - 15:30 26/Mar/2018



( blank space ) Capture figure ( blank space ) Capture figure


Installation instructions :

  1. Available versions
  2. Download and installation instructions (general users)
  3. Test data set - to test the installation worked !


General documentation :

  1. What does the pipeline do ? - from input to output
  2. FAQ : Flashed and nonflashed reads - what is this ?
  3. FAQ : Blat - filtering, what is this ?
  4. FAQ : Ploidy - filtering, what is this ?
  5. FAQ : Reproducing old results : difference between "ancient" run modes --CCversion CF3 --CCversion CF4 ?
  6. FAQ : Duplicate - filtering, how does it differ from "normal duplicate filtering" ?
  7. FAQ : This is all very nice, but I would like to have more P-values here ?


Analysis workflow :

  1. Generate oligo coordinate file
  2. Run pipeline
  3. Interpret your results